X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FTCoffeeColourScheme.java;h=812dca735468c6c0036a23cb7daa8a48e7988529;hb=321caefc5a40cd735c93e0bfa450e0e04abc485d;hp=6f55204f14321e8b2ee413ebcf51baf50524db60;hpb=b94b42970dda2cd5f640ebda31bbb835fd2914df;p=jalview.git diff --git a/src/jalview/schemes/TCoffeeColourScheme.java b/src/jalview/schemes/TCoffeeColourScheme.java index 6f55204..812dca7 100644 --- a/src/jalview/schemes/TCoffeeColourScheme.java +++ b/src/jalview/schemes/TCoffeeColourScheme.java @@ -87,7 +87,8 @@ public class TCoffeeColourScheme extends ResidueColourScheme // Search alignment to get all tcoffee annotation and pick one set of // annotation to use to colour seqs. seqMap = new IdentityHashMap(); - AnnotatedCollectionI alcontext = alignment instanceof AlignmentI ? alignment + AnnotatedCollectionI alcontext = alignment instanceof AlignmentI + ? alignment : alignment.getContext(); if (alcontext == null) { @@ -154,8 +155,8 @@ public class TCoffeeColourScheme extends ResidueColourScheme @Override public boolean isApplicableTo(AnnotatedCollectionI ac) { - AnnotatedCollectionI alcontext = ac instanceof AlignmentI ? ac : ac - .getContext(); + AnnotatedCollectionI alcontext = ac instanceof AlignmentI ? ac + : ac.getContext(); if (alcontext == null) { return false; @@ -170,4 +171,10 @@ public class TCoffeeColourScheme extends ResidueColourScheme { return JalviewColourScheme.TCoffee.toString(); } + + @Override + public boolean isSimple() + { + return false; + } }