X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FUserColourScheme.java;fp=src%2Fjalview%2Fschemes%2FUserColourScheme.java;h=8ca0b869347303cec6c3f4ce1ef667c09041ac70;hb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;hp=89ed91bbd72c29f86f0db9adb97e4c74f639c49d;hpb=1889827c44c51f6353fe8619e5d44b421158af23;p=jalview.git

diff --git a/src/jalview/schemes/UserColourScheme.java b/src/jalview/schemes/UserColourScheme.java
index 89ed91b..8ca0b86 100755
--- a/src/jalview/schemes/UserColourScheme.java
+++ b/src/jalview/schemes/UserColourScheme.java
@@ -44,18 +44,22 @@ public class UserColourScheme extends ResidueColourScheme
     super(ResidueProperties.aaIndex);
     colors = newColors;
   }
+
   @Override
   public ColourSchemeI applyTo(AnnotatedCollectionI sg,
           Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
   {
     UserColourScheme usc = new UserColourScheme(colors);
-    if (lowerCaseColours!=null) {
+    if (lowerCaseColours != null)
+    {
       usc.schemeName = new String(schemeName);
       usc.lowerCaseColours = new Color[lowerCaseColours.length];
-      System.arraycopy(lowerCaseColours, 0, usc.lowerCaseColours, 0, lowerCaseColours.length);
+      System.arraycopy(lowerCaseColours, 0, usc.lowerCaseColours, 0,
+              lowerCaseColours.length);
     }
     return usc;
   }
+
   public UserColourScheme(String colour)
   {
     super(ResidueProperties.aaIndex);
@@ -160,7 +164,8 @@ public class UserColourScheme extends ResidueColourScheme
 
   public void parseAppletParameter(String paramValue)
   {
-    // TODO: need a function to generate appletParameter colour string from a UCS
+    // TODO: need a function to generate appletParameter colour string from a
+    // UCS
     StringTokenizer st = new StringTokenizer(paramValue, ";");
     StringTokenizer st2;
     String token = null, colour, residues;