X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FUserColourScheme.java;h=8e58c209b1642492beb6183b39a56a020425b0e4;hb=ff8c06845590fd9fd423aa59809dcce9610ab295;hp=d95652d3fae3442de89531c33c09d8cc3fa3a4b0;hpb=8e1be43e250107a4d86898bd554cf03098fa5957;p=jalview.git

diff --git a/src/jalview/schemes/UserColourScheme.java b/src/jalview/schemes/UserColourScheme.java
index d95652d..8e58c20 100755
--- a/src/jalview/schemes/UserColourScheme.java
+++ b/src/jalview/schemes/UserColourScheme.java
@@ -73,7 +73,7 @@ public class UserColourScheme extends ResidueColourScheme
     schemeName = from.schemeName;
     if (from.lowerCaseColours != null)
     {
-      lowerCaseColours = new Color[lowerCaseColours.length];
+      lowerCaseColours = new Color[from.lowerCaseColours.length];
       System.arraycopy(from.lowerCaseColours, 0, lowerCaseColours, 0,
               from.lowerCaseColours.length);
     }
@@ -238,24 +238,6 @@ public class UserColourScheme extends ResidueColourScheme
 
   }
 
-  @Override
-  public Color findColour(char c, int j, SequenceI seq)
-  {
-    Color colour;
-    int index = ResidueProperties.aaIndex[c];
-
-    if (lowerCaseColours != null && 'a' <= c && c <= 'z')
-    {
-      colour = lowerCaseColours[index];
-    }
-    else
-    {
-      colour = colors[index];
-    }
-
-    return colour;
-  }
-
   public void setLowerCaseColours(Color[] lcolours)
   {
     lowerCaseColours = lcolours;