X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FSecondaryStructureListener.java;h=00012ab539251643fc5443164159446d89ab6cbd;hb=1a7569b26f3f24011b33f0551ecbf5377b1fb85b;hp=5d5d880cccb3dddf433c9e0c0538ab34902b4fd4;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java
index 5d5d880..00012ab 100644
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -20,11 +20,21 @@
  */
 package jalview.structure;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
 
 public interface SecondaryStructureListener
 {
   // TODO - redefine to allow RNA mouseovers to be passed back correctly to
   // listeners
-  public void mouseOverSequence(SequenceI sequence, int index);
+  /**
+   * act on a mouseover event
+   * 
+   * @param sequence
+   * @param index
+   *          the aligned sequence position (base 0)
+   * @param position
+   *          the dataset sequence position (base 1)
+   */
+  public void mouseOverSequence(SequenceI sequence, int index,
+          int position);
 }