X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FSecondaryStructureListener.java;h=b8edb2124eafb0c4dc40d7c1194f5c0ede044069;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=4ae917a4a94e8d48a6fedf605e6ae477155b37b2;hpb=bfa1ec36b19342ccdced621509f78dc527c3ad18;p=jalview.git

diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java
index 4ae917a..b8edb21 100644
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -1,25 +1,39 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.structure;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
 
 public interface SecondaryStructureListener
 {
-  public void mouseOverSequence(SequenceI sequence, int index);
+  // TODO - redefine to allow RNA mouseovers to be passed back correctly to
+  // listeners
+  /**
+   * act on a mouseover event
+   * 
+   * @param sequence
+   * @param index
+   *          the aligned sequence position (base 0)
+   * @param position
+   *          the dataset sequence position (base 1)
+   */
+  public void mouseOverSequence(SequenceI sequence, int index, int position);
 }