X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FSequenceListener.java;h=f8c5beaf67df08e8c12018d24e9b0fe8193035e9;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=f20fecb3e9f49c54e8246c0a628d8f8cafcbca02;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git

diff --git a/src/jalview/structure/SequenceListener.java b/src/jalview/structure/SequenceListener.java
index f20fecb..f8c5bea 100644
--- a/src/jalview/structure/SequenceListener.java
+++ b/src/jalview/structure/SequenceListener.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,13 +20,27 @@
  */
 package jalview.structure;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SearchResultsI;
+import jalview.datamodel.SequenceI;
 
 public interface SequenceListener
 {
+  // TODO remove this? never called on SequenceListener type
   public void mouseOverSequence(SequenceI sequence, int index, int pos);
 
-  public void highlightSequence(jalview.datamodel.SearchResults results);
+  /**
+   * Highlights any position(s) represented by the search results and
+   * (optionally) returns an informative message about the position(s)
+   * higlighted
+   * 
+   * @param results
+   * @return
+   */
+  public String highlightSequence(SearchResultsI results);
 
+  // TODO remove this? never called
   public void updateColours(SequenceI sequence, int index);
+
+  public VamsasSource getVamsasSource();
+
 }