X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureCommandsI.java;fp=src%2Fjalview%2Fstructure%2FStructureCommandsI.java;h=eda5aa938c3d288dd0374882a3b780dd993871bc;hb=6cb920bb7a7f285a165cd34b3429dabba71f7518;hp=a5a419c6706a4a36231cf74e984dbef81feadd50;hpb=675952adfc6e4c165f3e3fdb8384d6688637e972;p=jalview.git

diff --git a/src/jalview/structure/StructureCommandsI.java b/src/jalview/structure/StructureCommandsI.java
index a5a419c..eda5aa9 100644
--- a/src/jalview/structure/StructureCommandsI.java
+++ b/src/jalview/structure/StructureCommandsI.java
@@ -87,4 +87,17 @@ public interface StructureCommandsI
    */
   String showChains(List<String> toShow);
 
+  /**
+   * Returns zero, one or more commands to set attributes on mapped residues in
+   * the structure viewer for any features present and displayed in Jalview
+   * 
+   * @param ssm
+   * @param files
+   * @param sequence
+   * @param avp
+   * @return
+   */
+  String[] setAttributesForFeatures(StructureSelectionManager ssm,
+          String[] files, SequenceI[][] sequence, AlignmentViewPanel avp);
+
 }