X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureImportSettings.java;h=82b5f693c47005220be281ce1cf6810a8d04a229;hb=c889fc8840c719390e49eb27adbf6b1bf156ae12;hp=388ccbdfc3e865cfa475e70617d54ed6eb57468f;hpb=82a6c8e2e25b7534168b68b2c89b9cf195f815a5;p=jalview.git

diff --git a/src/jalview/structure/StructureImportSettings.java b/src/jalview/structure/StructureImportSettings.java
index 388ccbd..82b5f69 100644
--- a/src/jalview/structure/StructureImportSettings.java
+++ b/src/jalview/structure/StructureImportSettings.java
@@ -5,6 +5,7 @@ import jalview.datamodel.PDBEntry.Type;
 
 /**
  * bean holding settings for structure IO. TODO: tests for validation of values
+ * TODO: tests for race conditions (all fields are static, is that correct ?)
  * 
  * @author tcofoegbu
  *
@@ -31,8 +32,6 @@ public class StructureImportSettings
 
   private static boolean showSeqFeatures = true;
 
-  private static boolean processHETATMs = false;
-
   public enum StructureParser
   {
     JMOL_PARSER, JALVIEW_PARSER
@@ -111,17 +110,7 @@ public class StructureImportSettings
           String defaultStructureFileFormat)
   {
     StructureImportSettings.defaultStructureFileFormat = PDBEntry.Type
-            .valueOf(defaultStructureFileFormat);
-  }
-
-  public static boolean isProcessHETATMs()
-  {
-    return processHETATMs;
-  }
-
-  public static void setProcessHETATMs(boolean processHETATMs)
-  {
-    StructureImportSettings.processHETATMs = processHETATMs;
+            .valueOf(defaultStructureFileFormat.toUpperCase());
   }
 
   public static String getDefaultPDBFileParser()
@@ -138,7 +127,7 @@ public class StructureImportSettings
   public static void setDefaultPDBFileParser(String defaultPDBFileParser)
   {
     StructureImportSettings.defaultPDBFileParser = StructureParser
-            .valueOf(defaultPDBFileParser);
+            .valueOf(defaultPDBFileParser.toUpperCase());
   }
 
 }