X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureImportSettings.java;h=9662fee4f916e994f01921f423d6aa500f2acf40;hb=7d67fb613ec026dc9a265e351e7fab542e3f1d61;hp=82b5f693c47005220be281ce1cf6810a8d04a229;hpb=c889fc8840c719390e49eb27adbf6b1bf156ae12;p=jalview.git diff --git a/src/jalview/structure/StructureImportSettings.java b/src/jalview/structure/StructureImportSettings.java index 82b5f69..9662fee 100644 --- a/src/jalview/structure/StructureImportSettings.java +++ b/src/jalview/structure/StructureImportSettings.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.structure; import jalview.datamodel.PDBEntry; @@ -37,7 +57,6 @@ public class StructureImportSettings JMOL_PARSER, JALVIEW_PARSER } - /** * Determines the default file format for structure files to be downloaded * from the PDB sequence fetcher. Possible options include: PDB|mmCIF @@ -49,6 +68,7 @@ public class StructureImportSettings * are : JMolParser|JalveiwParser */ private static StructureParser defaultPDBFileParser = StructureParser.JMOL_PARSER; + public static void addSettings(boolean addAlignmentAnnotations, boolean processSecStr, boolean externalSecStr) { @@ -101,9 +121,9 @@ public class StructureImportSettings StructureImportSettings.showSeqFeatures = showSeqFeatures; } - public static String getDefaultStructureFileFormat() + public static PDBEntry.Type getDefaultStructureFileFormat() { - return defaultStructureFileFormat.toString(); + return defaultStructureFileFormat; } public static void setDefaultStructureFileFormat(