X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureListener.java;h=6285d286d0f1cacd26bac33f1b5a1e2fd131cb38;hb=02783b1d0f22e82e7854777646e39df0fc77de74;hp=5ceefd3f0c04fcc295b99c75ef286bc9f182229f;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java
index 5ceefd3..6285d28 100644
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -21,20 +21,26 @@ public interface StructureListener
 {
   /**
    * 
-   * @return list of structure files (unique IDs/filenames) that this listener handles messages for, or null if generic listener (only used by removeListener method)
+   * @return list of structure files (unique IDs/filenames) that this listener
+   *         handles messages for, or null if generic listener (only used by
+   *         removeListener method)
    */
   public String[] getPdbFile();
 
   /**
-   * NOT A LISTENER METHOD!
-   * called by structure viewer when the given atom/structure has been moused over. Typically, implementors call StructureSelectionManager.mouseOverStructure 
+   * NOT A LISTENER METHOD! called by structure viewer when the given
+   * atom/structure has been moused over. Typically, implementors call
+   * StructureSelectionManager.mouseOverStructure
+   * 
    * @param atomIndex
    * @param strInfo
    */
   public void mouseOverStructure(int atomIndex, String strInfo);
 
   /**
-   * called by StructureSelectionManager to inform viewer to highlight given atomspec
+   * called by StructureSelectionManager to inform viewer to highlight given
+   * atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -44,13 +50,17 @@ public interface StructureListener
           String pdbId);
 
   /**
-   * called by StructureSelectionManager when the colours of a sequence associated with a structure have changed.
-   * @param source (untyped) usually an alignPanel
+   * called by StructureSelectionManager when the colours of a sequence
+   * associated with a structure have changed.
+   * 
+   * @param source
+   *          (untyped) usually an alignPanel
    */
   public void updateColours(Object source);
 
   /**
    * called by Jalview to get the colour for the given atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -61,7 +71,10 @@ public interface StructureListener
           String chain, String pdbId);
 
   /**
-   * called by structureSelectionManager to instruct implementor to release any direct references it may hold to the given object (typically, these are Jalview alignment panels).
+   * called by structureSelectionManager to instruct implementor to release any
+   * direct references it may hold to the given object (typically, these are
+   * Jalview alignment panels).
+   * 
    * @param svl
    */
   public void releaseReferences(Object svl);