X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureListener.java;h=69658bf2e7b5a31adc0a8af8d7660174fea65310;hb=7f649ce2db77e15533c42997ae7a1561cb54539e;hp=73576e91e33469bd025a4bef3cf24a2b0a6bd877;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java
index 73576e9..69658bf 100644
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -20,40 +20,27 @@
  */
 package jalview.structure;
 
+import java.util.List;
+
 public interface StructureListener
 {
   /**
-   * 
-   * @return list of structure files (unique IDs/filenames) that this listener
-   *         handles messages for, or null if generic listener (only used by
-   *         removeListener method)
+   * Returns a list of structure files (unique IDs/filenames) that this listener
+   * handles messages for, or null if generic listener (only used by
+   * removeListener method)
    */
   public String[] getPdbFile();
 
   /**
-   * NOT A LISTENER METHOD! called by structure viewer when the given
-   * atom/structure has been moused over. Typically, implementors call
-   * StructureSelectionManager.mouseOverStructure
-   * 
-   * @param atomIndex
-   * @param strInfo
-   */
-  public void mouseOverStructure(int atomIndex, String strInfo);
-
-  /**
-   * called by StructureSelectionManager to inform viewer to highlight given
-   * atomspec
+   * Called by StructureSelectionManager to inform viewer to highlight given
+   * atom positions
    * 
-   * @param atomIndex
-   * @param pdbResNum
-   * @param chain
-   * @param pdbId
+   * @param atoms
    */
-  public void highlightAtom(int atomIndex, int pdbResNum, String chain,
-          String pdbId);
+  public void highlightAtoms(List<AtomSpec> atoms);
 
   /**
-   * called by StructureSelectionManager when the colours of a sequence
+   * Called by StructureSelectionManager when the colours of a sequence
    * associated with a structure have changed.
    * 
    * @param source
@@ -62,19 +49,7 @@ public interface StructureListener
   public void updateColours(Object source);
 
   /**
-   * called by Jalview to get the colour for the given atomspec
-   * 
-   * @param atomIndex
-   * @param pdbResNum
-   * @param chain
-   * @param pdbId
-   * @return
-   */
-  public java.awt.Color getColour(int atomIndex, int pdbResNum,
-          String chain, String pdbId);
-
-  /**
-   * called by structureSelectionManager to instruct implementor to release any
+   * Called by structureSelectionManager to instruct implementor to release any
    * direct references it may hold to the given object (typically, these are
    * Jalview alignment panels).
    *