X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureListener.java;h=8ac002b2332c2a56bbed9194b6b7980d33d92e53;hb=2cbc2e45a74eb8cf8040f9a71636289ca2db5241;hp=4ad4405ed29cf3a67a76cf892f6c22676b6a651a;hpb=d038c9702429f76a1556c7d2b282f26d9feb22f6;p=jalview.git

diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java
index 4ad4405..8ac002b 100644
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,19 +1,22 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.structure;
 
@@ -21,20 +24,26 @@ public interface StructureListener
 {
   /**
    * 
-   * @return list of structure files (unique IDs/filenames) that this listener handles messages for, or null if generic listener (only used by removeListener method)
+   * @return list of structure files (unique IDs/filenames) that this listener
+   *         handles messages for, or null if generic listener (only used by
+   *         removeListener method)
    */
   public String[] getPdbFile();
 
   /**
-   * NOT A LISTENER METHOD!
-   * called by structure viewer when the given atom/structure has been moused over. Typically, implementors call StructureSelectionManager.mouseOverStructure 
+   * NOT A LISTENER METHOD! called by structure viewer when the given
+   * atom/structure has been moused over. Typically, implementors call
+   * StructureSelectionManager.mouseOverStructure
+   * 
    * @param atomIndex
    * @param strInfo
    */
   public void mouseOverStructure(int atomIndex, String strInfo);
 
   /**
-   * called by StructureSelectionManager to inform viewer to highlight given atomspec
+   * called by StructureSelectionManager to inform viewer to highlight given
+   * atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -44,13 +53,17 @@ public interface StructureListener
           String pdbId);
 
   /**
-   * called by StructureSelectionManager when the colours of a sequence associated with a structure have changed.
-   * @param source (untyped) usually an alignPanel
+   * called by StructureSelectionManager when the colours of a sequence
+   * associated with a structure have changed.
+   * 
+   * @param source
+   *          (untyped) usually an alignPanel
    */
   public void updateColours(Object source);
 
   /**
    * called by Jalview to get the colour for the given atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -59,4 +72,13 @@ public interface StructureListener
    */
   public java.awt.Color getColour(int atomIndex, int pdbResNum,
           String chain, String pdbId);
+
+  /**
+   * called by structureSelectionManager to instruct implementor to release any
+   * direct references it may hold to the given object (typically, these are
+   * Jalview alignment panels).
+   * 
+   * @param svl
+   */
+  public void releaseReferences(Object svl);
 }