X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureListener.java;h=9fde3f1dbc8d706cce9f00772ae9e85da42278bc;hb=afffa24481a7d3cb65ae41e0948c16a5f490f302;hp=bf3ca2da835ab16862dfd3ba440034bbfc8d8f2e;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git
diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java
index bf3ca2d..9fde3f1 100644
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,57 +1,48 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
* This file is part of Jalview.
*
* Jalview is free software: you can redistribute it and/or
* modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
*
* Jalview is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty
* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
* PURPOSE. See the GNU General Public License for more details.
*
- * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
* The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.structure;
+import jalview.datamodel.SequenceI;
+
+import java.util.List;
+
public interface StructureListener
{
/**
- *
- * @return list of structure files (unique IDs/filenames) that this listener
- * handles messages for, or null if generic listener (only used by
- * removeListener method)
+ * Returns a list of structure files (unique IDs/filenames) that this listener
+ * handles messages for, or null if generic listener (only used by
+ * removeListener method)
*/
- public String[] getPdbFile();
+ public String[] getStructureFiles();
/**
- * NOT A LISTENER METHOD! called by structure viewer when the given
- * atom/structure has been moused over. Typically, implementors call
- * StructureSelectionManager.mouseOverStructure
+ * Called by StructureSelectionManager to inform viewer to highlight given
+ * atom positions
*
- * @param atomIndex
- * @param strInfo
+ * @param atoms
*/
- public void mouseOverStructure(int atomIndex, String strInfo);
+ public void highlightAtoms(List atoms);
/**
- * called by StructureSelectionManager to inform viewer to highlight given
- * atomspec
- *
- * @param atomIndex
- * @param pdbResNum
- * @param chain
- * @param pdbId
- */
- public void highlightAtom(int atomIndex, int pdbResNum, String chain,
- String pdbId);
-
- /**
- * called by StructureSelectionManager when the colours of a sequence
+ * Called by StructureSelectionManager when the colours of a sequence
* associated with a structure have changed.
*
* @param source
@@ -60,23 +51,19 @@ public interface StructureListener
public void updateColours(Object source);
/**
- * called by Jalview to get the colour for the given atomspec
- *
- * @param atomIndex
- * @param pdbResNum
- * @param chain
- * @param pdbId
- * @return
- */
- public java.awt.Color getColour(int atomIndex, int pdbResNum,
- String chain, String pdbId);
-
- /**
- * called by structureSelectionManager to instruct implementor to release any
+ * Called by structureSelectionManager to instruct implementor to release any
* direct references it may hold to the given object (typically, these are
* Jalview alignment panels).
*
* @param svl
*/
public void releaseReferences(Object svl);
+
+ /**
+ * Answers true if this listener is interested in the given sequence
+ *
+ * @param seq
+ * @return
+ */
+ public boolean isListeningFor(SequenceI seq);
}