X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureListener.java;h=e07b480aa0dd28f0500053a120078fe9cd8a17a0;hb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;hp=4ad4405ed29cf3a67a76cf892f6c22676b6a651a;hpb=d038c9702429f76a1556c7d2b282f26d9feb22f6;p=jalview.git

diff --git a/src/jalview/structure/StructureListener.java b/src/jalview/structure/StructureListener.java
index 4ad4405..e07b480 100644
--- a/src/jalview/structure/StructureListener.java
+++ b/src/jalview/structure/StructureListener.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -21,20 +21,26 @@ public interface StructureListener
 {
   /**
    * 
-   * @return list of structure files (unique IDs/filenames) that this listener handles messages for, or null if generic listener (only used by removeListener method)
+   * @return list of structure files (unique IDs/filenames) that this listener
+   *         handles messages for, or null if generic listener (only used by
+   *         removeListener method)
    */
   public String[] getPdbFile();
 
   /**
-   * NOT A LISTENER METHOD!
-   * called by structure viewer when the given atom/structure has been moused over. Typically, implementors call StructureSelectionManager.mouseOverStructure 
+   * NOT A LISTENER METHOD! called by structure viewer when the given
+   * atom/structure has been moused over. Typically, implementors call
+   * StructureSelectionManager.mouseOverStructure
+   * 
    * @param atomIndex
    * @param strInfo
    */
   public void mouseOverStructure(int atomIndex, String strInfo);
 
   /**
-   * called by StructureSelectionManager to inform viewer to highlight given atomspec
+   * called by StructureSelectionManager to inform viewer to highlight given
+   * atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -44,13 +50,17 @@ public interface StructureListener
           String pdbId);
 
   /**
-   * called by StructureSelectionManager when the colours of a sequence associated with a structure have changed.
-   * @param source (untyped) usually an alignPanel
+   * called by StructureSelectionManager when the colours of a sequence
+   * associated with a structure have changed.
+   * 
+   * @param source
+   *          (untyped) usually an alignPanel
    */
   public void updateColours(Object source);
 
   /**
    * called by Jalview to get the colour for the given atomspec
+   * 
    * @param atomIndex
    * @param pdbResNum
    * @param chain
@@ -59,4 +69,13 @@ public interface StructureListener
    */
   public java.awt.Color getColour(int atomIndex, int pdbResNum,
           String chain, String pdbId);
+
+  /**
+   * called by structureSelectionManager to instruct implementor to release any
+   * direct references it may hold to the given object (typically, these are
+   * Jalview alignment panels).
+   * 
+   * @param svl
+   */
+  public void releaseReferences(Object svl);
 }