X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureMapping.java;h=147cc079e0cc94ccc90eaf7ac6087c38372a41b0;hb=9876fdccf311378e690c1f9e18db52675d427b89;hp=cbc2c0070952de38a27c2357fe712d74b9327982;hpb=9a47b82e8b3b647773c1c0df94b6ce6b477587e4;p=jalview.git

diff --git a/src/jalview/structure/StructureMapping.java b/src/jalview/structure/StructureMapping.java
index cbc2c00..147cc07 100644
--- a/src/jalview/structure/StructureMapping.java
+++ b/src/jalview/structure/StructureMapping.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -133,7 +133,10 @@ public class StructureMapping
     {
       ds = ds.getDatasetSequence();
     }
-    ala_copy.remap(ds, mapping, 0, -1, 1);
+    // need to relocate annotation from pdb coordinates to local sequence
+    // -1,-1 doesn't look at pdbresnum but fails to remap sequence positions...
+
+    ala_copy.remap(ds, mapping, -1, -1, 0);
     ds.addAlignmentAnnotation(ala_copy);
     if (ds != sequence)
     {