X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;h=1fcbbf53334caf8b2dcec5b9d95e033f3a63514b;hb=0d1e2a723c5c52a340ab67a7a573fa34ef23749d;hp=6319338e4cb80b67d2e21e1dbb05fcc63e4ea3b9;hpb=7720585dc8cc56cdad2486b330ed37ddd0133531;p=jalview.git

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 6319338..1fcbbf5 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -410,7 +410,10 @@ public class StructureSelectionManager
         registerPDBFile(pdb.getId().trim(), pdbFile);
       }
       // if PDBId is unavailable then skip SIFTS mapping execution path
-      isMapUsingSIFTs = isMapUsingSIFTs && pdb.isPPDBIdAvailable();
+      // TODO: JAL-3868 need to know if structure is actually from 
+      // PDB (has valid PDB ID and has provenance suggesting it 
+      // actually came from PDB)
+      isMapUsingSIFTs = isMapUsingSIFTs && pdb.isPPDBIdAvailable() && !pdb.getId().startsWith("AF-");
 
     } catch (Exception ex)
     {
@@ -430,7 +433,8 @@ public class StructureSelectionManager
     } catch (SiftsException e)
     {
       isMapUsingSIFTs = false;
-      e.printStackTrace();
+      Cache.log.error("SIFTS mapping failed", e);
+      Cache.log.error("Falling back on Needleman & Wunsch alignment");
       siftsClient = null;
     }