X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;h=58bba481587a6da743b068b0d49afa238ef56f03;hb=3325395b33ef3b52b4a62327621c5bddf12ee4e0;hp=4d94b2d3385b067533468c3724dadb36be305592;hpb=84e882e59ed2ba127f53e77c8ae52b3358638771;p=jalview.git diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java index 4d94b2d..58bba48 100644 --- a/src/jalview/structure/StructureSelectionManager.java +++ b/src/jalview/structure/StructureSelectionManager.java @@ -253,7 +253,7 @@ public class StructureSelectionManager boolean first = true; for (int i = 0; i < pdb.chains.size(); i++) { - PDBChain chain = ((PDBChain) pdb.chains.elementAt(i)); + PDBChain chain = (pdb.chains.elementAt(i)); if (targetChain.length() > 0 && !targetChain.equals(chain.id) && !infChain) { @@ -262,8 +262,8 @@ public class StructureSelectionManager // TODO: correctly determine sequence type for mixed na/peptide // structures AlignSeq as = new AlignSeq(sequence[s], - ((PDBChain) pdb.chains.elementAt(i)).sequence, - ((PDBChain) pdb.chains.elementAt(i)).isNa ? AlignSeq.DNA + pdb.chains.elementAt(i).sequence, + pdb.chains.elementAt(i).isNa ? AlignSeq.DNA : AlignSeq.PEP); as.calcScoreMatrix(); as.traceAlignment();