X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Furls%2FCustomUrlProvider.java;h=86d5660b3e1df0b749a1c62f9ef46d8133faa78a;hb=cfed9d8a9e10be992877d6097260758ee5563630;hp=0d5ef990ce6260f0b82f8c55360fb408ccc82251;hpb=3d0101179759ef157b088ea135423cd909512d9f;p=jalview.git

diff --git a/src/jalview/urls/CustomUrlProvider.java b/src/jalview/urls/CustomUrlProvider.java
index 0d5ef99..86d5660 100644
--- a/src/jalview/urls/CustomUrlProvider.java
+++ b/src/jalview/urls/CustomUrlProvider.java
@@ -160,10 +160,24 @@ public class CustomUrlProvider extends UrlProviderImpl
    */
   private void upgradeOldLinks(HashMap<String, UrlLink> urls)
   {
+    boolean upgrade = false;
     // upgrade old SRS link
     if (urls.containsKey(SRS_LABEL))
     {
       urls.remove(SRS_LABEL);
+      upgrade = true;
+    }
+    // upgrade old EBI link - easier just to remove and re-add than faffing
+    // around checking exact url
+    if (urls.containsKey(UrlConstants.DEFAULT_LABEL))
+    {
+      // note because this is called separately for selected and nonselected
+      // urls, the default url will not always be present
+      urls.remove(UrlConstants.DEFAULT_LABEL);
+      upgrade = true;
+    }
+    if (upgrade)
+    {
       UrlLink link = new UrlLink(UrlConstants.DEFAULT_STRING);
       link.setLabel(UrlConstants.DEFAULT_LABEL);
       urls.put(UrlConstants.DEFAULT_LABEL, link);