X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Futil%2FComparison.java;h=32e049d08b05c6faaa13c8aed17fdbc3659f9b96;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=9cb2430d3546721c2500d30f7bf6ba28738acf64;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git

diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java
index 9cb2430..32e049d 100755
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -1,20 +1,19 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
 package jalview.util;
 
@@ -35,9 +34,9 @@ public class Comparison
    * DOCUMENT ME!
    * 
    * @param ii
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * @param jj
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
@@ -50,13 +49,13 @@ public class Comparison
    * this was supposed to be an ungapped pid calculation
    * 
    * @param ii
-   *                SequenceI
+   *          SequenceI
    * @param jj
-   *                SequenceI
+   *          SequenceI
    * @param start
-   *                int
+   *          int
    * @param end
-   *                int
+   *          int
    * @return float
    */
   public static float compare(SequenceI ii, SequenceI jj, int start, int end)
@@ -119,9 +118,9 @@ public class Comparison
    * this is a gapped PID calculation
    * 
    * @param s1
-   *                SequenceI
+   *          SequenceI
    * @param s2
-   *                SequenceI
+   *          SequenceI
    * @return float
    */
   public final static float PID(String seq1, String seq2)
@@ -186,7 +185,7 @@ public class Comparison
    * DOCUMENT ME!
    * 
    * @param c
-   *                DOCUMENT ME!
+   *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */