X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Futil%2FDBRefUtils.java;h=a101d828838701d4c700c3e21540a08715953d14;hb=dee97314c8d002df2ec57812bf82f0460ba51dd8;hp=e17a336a59021fe19ed88d16e52bcabac7cf99b1;hpb=5faac1104c41690e38e259fae5bb700236021360;p=jalview.git

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index e17a336..a101d82 100755
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -30,6 +30,7 @@ import java.util.Map;
 
 import com.stevesoft.pat.Regex;
 
+import jalview.bin.Console;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.Mapping;
@@ -405,7 +406,7 @@ public class DBRefUtils
         }
         else
         {
-          System.err.println("Malformed PDB DR line:" + acn);
+          jalview.bin.Console.errPrintln("Malformed PDB DR line:" + acn);
         }
       }
       else
@@ -810,9 +811,12 @@ public class DBRefUtils
           // toPromote.add(cand);
           if (!cand.isPrimaryCandidate())
           {
-            System.out.println(
-                    "Warning: Couldn't promote dbref " + cand.toString()
-                            + " for sequence " + sequence.toString());
+            if (Console.isDebugEnabled())
+            {
+              Console.debug(
+                      "Warning: Couldn't promote dbref " + cand.toString()
+                              + " for sequence " + sequence.toString());
+            }
           }
         }
       }