X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Futil%2FUrlLink.java;h=00e33b2a83c4beac3ff58895c28b32075635cf3d;hb=f5a2fd32ad34d909ba7326ab40c1709cf00bdf32;hp=21dee381bcacf40b1c04a0e8297ea86379b21021;hpb=0ef6205b5b4caef00329b34d9ad118804e5b29be;p=jalview.git

diff --git a/src/jalview/util/UrlLink.java b/src/jalview/util/UrlLink.java
index 21dee38..00e33b2 100644
--- a/src/jalview/util/UrlLink.java
+++ b/src/jalview/util/UrlLink.java
@@ -1,3 +1,21 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+ * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * 
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.util;
 
 import java.util.Vector;
@@ -11,6 +29,7 @@ public class UrlLink
    * strings and replace the result in the URL. Regex's operate on the whole ID
    * string given to the matchURL method, if no regex is supplied, then only
    * text following the first pipe symbol will be susbstituted.
+   * Usage documentation todo.
    */
   private String url_suffix, url_prefix, target, label, regexReplace;
 
@@ -99,7 +118,7 @@ public class UrlLink
       label = link.substring(0, sep = link.lastIndexOf("|"));
       url_prefix = link.substring(sep + 1);
       regexReplace = null; // implies we trim any prefix if necessary //
-                            // regexReplace=".*\\|?(.*)";
+      // regexReplace=".*\\|?(.*)";
       url_suffix = null;
     }
   }
@@ -153,8 +172,8 @@ public class UrlLink
   }
 
   /**
-   * 
-   * @return true if URL string could not be parsed properly.
+   * Check if URL string was parsed properly.
+   * @return boolean - if false then <code>getInvalidMessage</code> returns an error message
    */
   public boolean isValid()
   {
@@ -326,7 +345,7 @@ public class UrlLink
      * //"123123312", "123123 ABCDE foo", "PFAM:PF23943",
      */
     "Label:gi|9234|pdb|102L|A" };
-
+    // TODO: test the setLabel method.
     for (int i = 0; i < links.length; i++)
     {
       UrlLink ul = new UrlLink(links[i]);
@@ -366,4 +385,9 @@ public class UrlLink
     // TODO Auto-generated method stub
     return dynamic;
   }
+
+  public void setLabel(String newlabel)
+  {
+    this.label = newlabel;
+  }
 }