X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Futil%2FUrlLink.java;h=8d3de7d4e25255a553bad3c2f923b7f51a6b800a;hb=c1f3a352a553ccd40063b14336b27e5a2a7329cf;hp=18ee9b6014bf0bc02b8e7f291e08a420883bcf00;hpb=56da3dabe5fd0b8e68daca4ae742850bd763a207;p=jalview.git

diff --git a/src/jalview/util/UrlLink.java b/src/jalview/util/UrlLink.java
index 18ee9b6..8d3de7d 100644
--- a/src/jalview/util/UrlLink.java
+++ b/src/jalview/util/UrlLink.java
@@ -322,8 +322,8 @@ public class UrlLink
             // debug
             for (int s = 0; s <= rg.numSubs(); s++)
             {
-              System.err.println("Sub " + s + " : " + rg.matchedFrom(s)
-                      + " : " + rg.matchedTo(s) + " : '"
+              jalview.bin.Console.errPrintln("Sub " + s + " : "
+                      + rg.matchedFrom(s) + " : " + rg.matchedTo(s) + " : '"
                       + rg.stringMatched(s) + "'");
             }
             // try to collate subgroup matches
@@ -612,17 +612,17 @@ public class UrlLink
     if (usesDBAccession()) // link is ID
     {
       // collect matching db-refs
-      DBRefEntry[] dbr = DBRefUtils.selectRefs(seq.getDBRefs(),
+      List<DBRefEntry> dbr = DBRefUtils.selectRefs(seq.getDBRefs(),
               new String[]
               { target });
 
       // if there are any dbrefs which match up with the link
       if (dbr != null)
       {
-        for (int r = 0; r < dbr.length; r++)
+        for (int r = 0, nd = dbr.size(); r < nd; r++)
         {
           // create Bare ID link for this URL
-          createBareURLLink(dbr[r].getAccessionId(), true, linkset);
+          createBareURLLink(dbr.get(r).getAccessionId(), true, linkset);
         }
       }
     }