X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;fp=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=a9d3b77f29eb5acd454997b18f2bc8d4f48298c0;hb=3538805166769a407d01240d196c723d9a458bed;hp=9f53f02672f76dacc4937a71d7212b9717f84c4b;hpb=56308882b011c6c6ff96786490bbb1c937d3ade3;p=jalview.git

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 9f53f02..a9d3b77 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -634,6 +634,8 @@ public abstract class AlignmentViewport implements AlignViewportI,
               || cs instanceof Blosum62ColourScheme)
       {
         globalColourScheme.setConservation(hconservation);
+        globalColourScheme
+                .setConservationApplied(getConservationSelected());
       }
       globalColourScheme.alignmentChanged(alignment, hiddenRepSequences);
     }