X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=a8c93cfff30874d881faa8c9f049cdf596d4dbf0;hb=3acfdb3ddd5e3b785fd0880bcebc9e267a717bbe;hp=a648b348efa986e239a00f56afdf26a39d267168;hpb=4a59f639cf5769d9ec66142ebecfa4961c5d3b04;p=jalview.git

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index a648b34..a8c93cf 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -51,6 +51,7 @@ import jalview.datamodel.AlignmentView;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.ColumnSelection;
 import jalview.datamodel.ContactListI;
+import jalview.datamodel.ContactMatrixI;
 import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.HiddenSequences;
 import jalview.datamodel.ProfilesI;
@@ -59,6 +60,7 @@ import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceCollectionI;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.gui.QuitHandler;
 import jalview.project.Jalview2XML;
 import jalview.renderer.ResidueShader;
 import jalview.renderer.ResidueShaderI;
@@ -2947,6 +2949,13 @@ public abstract class AlignmentViewport
     return alignment.getContactListFor(_aa, column);
   }
 
+  @Override
+  public ContactMatrixI getContactMatrix(
+          AlignmentAnnotation alignmentAnnotation)
+  {
+    return alignment.getContactMatrixFor(alignmentAnnotation);
+  }
+
   /**
    * get the consensus sequence as displayed under the PID consensus annotation
    * row.
@@ -3115,9 +3124,15 @@ public abstract class AlignmentViewport
 
   public void setSavedUpToDate(boolean s)
   {
+    setSavedUpToDate(s, QuitHandler.Message.UNSAVED_CHANGES);
+  }
+
+  public void setSavedUpToDate(boolean s, QuitHandler.Message m)
+  {
     Console.debug(
             "Setting " + this.getViewId() + " setSavedUpToDate to " + s);
     savedUpToDate = s;
+    QuitHandler.setMessage(m);
   }
 
   public boolean savedUpToDate()