X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=e5c7b4c225f82f13070858a812d249d0d31d8d9e;hb=e72d0b60b3078d4afed714491600efce110f0336;hp=abb8f63b221914066c563f5c809ae53e1007ad64;hpb=4f094851cd2247ea2d982e7829a6f5b663042573;p=jalview.git

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index abb8f63..e5c7b4c 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -626,9 +626,6 @@ public abstract class AlignmentViewport implements AlignViewportI,
 
     if (cs != null)
     {
-      // if (getConservationSelected() || getAbovePIDThreshold()
-      // || cs instanceof PIDColourScheme
-      // || cs instanceof Blosum62ColourScheme)
       if (getConservationSelected())
       {
         residueShading.setConservation(hconservation);
@@ -1086,6 +1083,10 @@ public abstract class AlignmentViewport implements AlignViewportI,
   public void setSelectionGroup(SequenceGroup sg)
   {
     selectionGroup = sg;
+    if (sg != null)
+    {
+      sg.setContext(alignment);
+    }
   }
 
   public void setHiddenColumns(ColumnSelection colsel)