X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FPCAModel.java;h=29838518818a35700f935afe1f2c893fe49d5750;hb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;hp=a9c87872d4962c6e5a16f6656d17a4de318fd0d4;hpb=b2f9a8d7bce642ff4011bc6d49e02bb0569fbb11;p=jalview.git diff --git a/src/jalview/viewmodel/PCAModel.java b/src/jalview/viewmodel/PCAModel.java index a9c8787..2983851 100644 --- a/src/jalview/viewmodel/PCAModel.java +++ b/src/jalview/viewmodel/PCAModel.java @@ -1,19 +1,21 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1) + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.viewmodel; @@ -45,7 +47,7 @@ public class PCAModel AlignmentView seqstrings; SequenceI[] seqs; - + /** * Score matrix used to calculate PC */ @@ -68,7 +70,8 @@ public class PCAModel public void run() { - pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide, score_matrix); + pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide, + score_matrix); pca.setJvCalcMode(jvCalcMode); pca.run(); @@ -239,5 +242,5 @@ public class PCAModel { this.score_matrix = score_matrix; } - + }