X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FPCAModel.java;h=9b050ef1736ee6d1265af939ea555204dcb575f3;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=a501793fb0b5f2bdaed498433ac67c31def23b9c;hpb=47168f025aefdaa044802bd5f8f510ffe43a4808;p=jalview.git diff --git a/src/jalview/viewmodel/PCAModel.java b/src/jalview/viewmodel/PCAModel.java index a501793..9b050ef 100644 --- a/src/jalview/viewmodel/PCAModel.java +++ b/src/jalview/viewmodel/PCAModel.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * @@ -20,13 +20,13 @@ */ package jalview.viewmodel; -import java.util.Vector; - import jalview.analysis.PCA; +import jalview.api.RotatableCanvasI; import jalview.datamodel.AlignmentView; import jalview.datamodel.SequenceI; import jalview.datamodel.SequencePoint; -import jalview.api.RotatableCanvasI; + +import java.util.Vector; public class PCAModel { @@ -47,7 +47,7 @@ public class PCAModel AlignmentView seqstrings; SequenceI[] seqs; - + /** * Score matrix used to calculate PC */ @@ -70,7 +70,8 @@ public class PCAModel public void run() { - pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide, score_matrix); + pca = new PCA(seqstrings.getSequenceStrings(' '), nucleotide, + score_matrix); pca.setJvCalcMode(jvCalcMode); pca.run(); @@ -241,5 +242,5 @@ public class PCAModel { this.score_matrix = score_matrix; } - + }