X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FViewportRanges.java;h=9f54964e8f7ca4d80c763988a09c151e0ffa35d3;hb=51ca42a8c4525c6871e3c8ea529b6cb8a59bb10f;hp=691e4924cdd34bcde5ed2cc97c89c672fc0ec890;hpb=8c5cefb3ac80bd094a8dab7ce6735a11583b1772;p=jalview.git

diff --git a/src/jalview/viewmodel/ViewportRanges.java b/src/jalview/viewmodel/ViewportRanges.java
index 691e492..9f54964 100644
--- a/src/jalview/viewmodel/ViewportRanges.java
+++ b/src/jalview/viewmodel/ViewportRanges.java
@@ -97,7 +97,7 @@ public class ViewportRanges extends ViewportProperties
    */
   public int getVisibleAlignmentWidth()
   {
-    return al.getWidth() - al.getHiddenColumns().getSize();
+    return al.getVisibleWidth();
   }
 
   /**
@@ -137,11 +137,31 @@ public class ViewportRanges extends ViewportProperties
     int oldstartres = oldvalues[0];
     int oldendres = oldvalues[1];
 
+    if (oldstartres == startRes && oldendres == endRes)
+    {
+      return; // BH 2019.07.27 standard check for no changes
+    }
+
+    // listeners include:
+
+    // jalview.gui.SeqCanvas[,0,0,568x90,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=]
+    // STARTRES, STARTRESANDSEQ
+    // jalview.gui.IdCanvas[,0,0,112x90,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=java.awt.Dimension[width=112,height=0]]
+    // jalview.gui.ScalePanel[,0,0,594x17,layout=java.awt.FlowLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=]
+    // jalview.gui.AnnotationPanel[,0,0,0x162,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=java.awt.Dimension[width=1,height=162]]
+    // jalview.gui.AlignmentPanel[,0,0,706x133,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777225,maximumSize=,minimumSize=,preferredSize=java.awt.Dimension[width=220,height=166]]
+    // jalview.gui.OverviewPanel[,0,0,543x135,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=9,maximumSize=,minimumSize=,preferredSize=java.awt.Dimension[width=543,height=135]]
+
+
+    // "STARTRES" is a misnomer here -- really "STARTORENDRES"
+    // note that this could be "no change" if the range is just being expanded
     changeSupport.firePropertyChange(STARTRES, oldstartres, startRes);
     if (oldstartres == startRes)
     {
-      // event won't be fired if start positions are same
-      // fire an event for the end positions in case they changed
+      // No listener cares about this
+      // "ENDRES" is a misnomer here -- really "ENDONLYRES"
+      // BH 2019.07.27 adds end change check
+      // fire only if only the end is changed
       changeSupport.firePropertyChange(ENDRES, oldendres, endRes);
     }
   }
@@ -203,12 +223,13 @@ public class ViewportRanges extends ViewportProperties
    */
   public void setStartSeq(int seq)
   {
-    int startseq = seq;
     int height = getViewportHeight();
-    if (startseq + height - 1 > getVisibleAlignmentHeight() - 1)
-    {
-      startseq = getVisibleAlignmentHeight() - height;
-    }
+    int startseq = Math.max(seq, getVisibleAlignmentHeight() - height);
+    // BH 2019.07.27 cosmetic only -- was:
+    // if (startseq + height - 1 > getVisibleAlignmentHeight() - 1)
+    // {
+    // startseq = getVisibleAlignmentHeight() - height;
+    // }
     setStartEndSeq(startseq, startseq + height - 1);
   }
 
@@ -224,15 +245,24 @@ public class ViewportRanges extends ViewportProperties
    */
   public void setStartEndSeq(int start, int end)
   {
+    // System.out.println("ViewportRange setStartEndSeq " + start + " " + end);
     int[] oldvalues = updateStartEndSeq(start, end);
     int oldstartseq = oldvalues[0];
     int oldendseq = oldvalues[1];
 
+    if (oldstartseq == startSeq && oldendseq == endSeq)
+    {
+      return; // BH 2019.07.27 standard check for no changes
+    }
+
+    // "STARTSEQ" is a misnomer here -- really "STARTORENDSEQ"
     changeSupport.firePropertyChange(STARTSEQ, oldstartseq, startSeq);
     if (oldstartseq == startSeq)
     {
-      // event won't be fired if start positions are the same
-      // fire in case the end positions changed
+      // Note that all listeners ignore this - could be removed, or there is a
+      // bug.
+      // "ENDSEQ" is a misnomer here -- really "ENDONLYSEQ"
+      // additional fire, only if only the end is changed
       changeSupport.firePropertyChange(ENDSEQ, oldendseq, endSeq);
     }
   }
@@ -285,12 +315,12 @@ public class ViewportRanges extends ViewportProperties
    * event.
    * 
    * @param seq
-   *          sequence position
+   *          sequence position in the range [0, height)
    */
   public void setEndSeq(int seq)
   {
-    int height = getViewportHeight();
-    setStartEndSeq(seq - height + 1, seq);
+    // BH 2018.04.18 added safety for seq < 0; comment about not being >= height
+    setStartEndSeq(Math.max(0, seq + 1 - getViewportHeight()), seq);
   }
 
   /**
@@ -305,6 +335,7 @@ public class ViewportRanges extends ViewportProperties
    */
   public void setStartResAndSeq(int res, int seq)
   {
+    // from Overview only
     int width = getViewportWidth();
     int[] oldresvalues = updateStartEndRes(res, res + width - 1);
 
@@ -316,9 +347,9 @@ public class ViewportRanges extends ViewportProperties
     }
     int[] oldseqvalues = updateStartEndSeq(startseq, startseq + height - 1);
 
-    int[] old = new int[] { oldresvalues[0], oldseqvalues[0] };
-    int[] newresseq = new int[] { startRes, startSeq };
-    changeSupport.firePropertyChange(STARTRESANDSEQ, old, newresseq);
+    int[] oldvalues = new int[] { oldresvalues[0], oldseqvalues[0] };
+    int[] newvalues = new int[] { startRes, startSeq };
+    changeSupport.firePropertyChange(STARTRESANDSEQ, oldvalues, newvalues);
   }
 
   /**
@@ -425,17 +456,21 @@ public class ViewportRanges extends ViewportProperties
   public void setViewportStartAndHeight(int start, int h)
   {
     int vpstart = start;
+
+    int visHeight = getVisibleAlignmentHeight();
     if (vpstart < 0)
     {
       vpstart = 0;
     }
-    else if ((h <= getVisibleAlignmentHeight())
-            && (vpstart + h - 1 > getVisibleAlignmentHeight() - 1))
+    else if (h <= visHeight && vpstart + h > visHeight)
     // viewport height is less than the full alignment and we are running off
     // the bottom
     {
-      vpstart = getVisibleAlignmentHeight() - h;
+      vpstart = visHeight - h;
     }
+    // System.out.println("ViewportRanges setviewportStartAndHeight " + vpstart
+    // + " " + start + " " + h + " " + getVisibleAlignmentHeight());
+
     setStartEndSeq(vpstart, vpstart + h - 1);
   }
 
@@ -626,7 +661,10 @@ public class ViewportRanges extends ViewportProperties
   }
 
   /**
-   * Set the viewport location so that a position is visible
+   * Set the viewport location so that a position is visible. From
+   * SeqPanel.scrollToVisible(true) only, from AlignFrame keyboard actions
+   * SeqPanel.scrollCursor[Row(VK_S)/Column(VK_C)/RowAndColumn(VK_ENTER,COMMA)/Position(VK_P)]
+   * 
    * 
    * @param x
    *          column to be visible: absolute position in alignment