X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2Fseqfeatures%2FFeatureRendererModel.java;h=1d09dcacbe5bd2d069338c47c3fdf193e3efbd54;hb=163ed5b997bbda48e4cdd950e87a8fe01baae7fb;hp=de1ee5ebb37a15332c5b800ac7a2780bc2710d43;hpb=c430867beda6dcf8236f59d1346ff4b026b0b62b;p=jalview.git

diff --git a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
index de1ee5e..1d09dca 100644
--- a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
+++ b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
@@ -559,7 +559,8 @@ public abstract class FeatureRendererModel implements
    * Returns the configured colour for a particular feature instance. This
    * includes calculation of 'colour by label', or of a graduated score colour,
    * if applicable. It does not take into account feature visibility or colour
-   * transparency.
+   * transparency. Returns null for a score feature whose score value lies
+   * outside any colour threshold.
    * 
    * @param feature
    * @return
@@ -571,19 +572,6 @@ public abstract class FeatureRendererModel implements
   }
 
   /**
-   * Answers true unless the feature has a graduated colour scheme and the
-   * feature value lies outside the current threshold for display
-   * 
-   * @param sequenceFeature
-   * @return
-   */
-  protected boolean showFeature(SequenceFeature sequenceFeature)
-  {
-    FeatureColourI fc = getFeatureStyle(sequenceFeature.type);
-    return fc.isColored(sequenceFeature);
-  }
-
-  /**
    * Answers true if the feature type is currently selected to be displayed,
    * else false
    *