X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2Fseqfeatures%2FFeatureRendererModel.java;h=674f3d1f0d544b068703bf79d1998efc89a4cd32;hb=7f649ce2db77e15533c42997ae7a1561cb54539e;hp=30d14c2a10f644667d0e48fa1bb34a160349dd6e;hpb=497958b4e5217efaa3ddeece38f38c3a6e98cb96;p=jalview.git

diff --git a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
index 30d14c2..674f3d1 100644
--- a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
+++ b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
@@ -246,6 +246,7 @@ public abstract class FeatureRendererModel implements
   {
     ArrayList<SequenceFeature> tmp = new ArrayList<SequenceFeature>();
     SequenceFeature[] features = sequence.getSequenceFeatures();
+
     if (features != null)
     {
       for (int i = 0; i < features.length; i++)
@@ -322,9 +323,7 @@ public abstract class FeatureRendererModel implements
     for (int i = 0; i < alignment.getHeight(); i++)
     {
       SequenceI asq = alignment.getSequenceAt(i);
-      SequenceI dasq = asq.getDatasetSequence();
-      SequenceFeature[] features = dasq != null ? dasq
-              .getSequenceFeatures() : asq.getSequenceFeatures();
+      SequenceFeature[] features = asq.getSequenceFeatures();
 
       if (features == null)
       {
@@ -900,7 +899,7 @@ public abstract class FeatureRendererModel implements
       {
         for (int i = 0; i < typ.length; i++)
         {
-          if (feature_disp.isVisible(typ[i]))
+          if (!feature_disp.isVisible(typ[i]))
           {
             typ[i] = null;
           }