X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2Fseqfeatures%2FFeatureRendererModel.java;h=bedbaf51186ac1e4f8a7502a7469e0bbfdb3a34a;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=19c6ca889d50bcd6524a84b522cbda0b3e082002;hpb=0873fd1ab406be7ef121f466c7b53e4b6315bbca;p=jalview.git

diff --git a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
index 19c6ca8..bedbaf5 100644
--- a/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
+++ b/src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java
@@ -119,8 +119,7 @@ public abstract class FeatureRendererModel implements
     }
     if (!fdi.isRegistered(featureType))
     {
-      pushFeatureType(Arrays.asList(new String[]
-      { featureType }));
+      pushFeatureType(Arrays.asList(new String[] { featureType }));
     }
     fdi.setVisible(featureType);
   }
@@ -163,7 +162,7 @@ public abstract class FeatureRendererModel implements
     types.toArray(neworder);
     if (renderOrder != null)
     {
-      System.arraycopy(neworder,0,neworder,renderOrder.length,ts);
+      System.arraycopy(neworder, 0, neworder, renderOrder.length, ts);
       System.arraycopy(renderOrder, 0, neworder, 0, renderOrder.length);
     }
     renderOrder = neworder;
@@ -186,8 +185,7 @@ public abstract class FeatureRendererModel implements
   protected final byte[] normaliseScore(SequenceFeature sequenceFeature)
   {
     float[] mm = ((float[][]) minmax.get(sequenceFeature.type))[0];
-    final byte[] r = new byte[]
-    { 0, (byte) 255 };
+    final byte[] r = new byte[] { 0, (byte) 255 };
     if (mm != null)
     {
       if (r[0] != 0 || mm[0] < 0.0)
@@ -375,14 +373,13 @@ public abstract class FeatureRendererModel implements
           float[][] mm = (float[][]) minmax.get(features[index].getType());
           if (mm == null)
           {
-            mm = new float[][]
-            { null, null };
+            mm = new float[][] { null, null };
             minmax.put(features[index].getType(), mm);
           }
           if (mm[nonpos] == null)
           {
-            mm[nonpos] = new float[]
-            { features[index].score, features[index].score };
+            mm[nonpos] = new float[] { features[index].score,
+                features[index].score };
 
           }
           else
@@ -433,8 +430,7 @@ public abstract class FeatureRendererModel implements
         {
           if (initOrders)
           {
-            setOrder(oldRender[j], (1 - (1 + (float) j)
-                    / oldRender.length));
+            setOrder(oldRender[j], (1 - (1 + (float) j) / oldRender.length));
           }
           if (allfeatures.contains(oldRender[j]))
           {
@@ -770,8 +766,7 @@ public abstract class FeatureRendererModel implements
   {
     if (renderOrder == null)
     {
-      return Arrays.asList(new String[]
-      {});
+      return Arrays.asList(new String[] {});
     }
     return Arrays.asList(renderOrder);
   }