X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2Fstyles%2FViewStyle.java;h=91f2f0cdbc4b1a4f40388d9aa4b90ac5283c47c8;hb=9e458b702f71b2db6adb919d88f93fc0bedc5178;hp=3ed56349588040b17216596f3aa00eda333c09f3;hpb=be7d3d5e0d85c7c8dcfdf35a6240da9c438ef9bb;p=jalview.git

diff --git a/src/jalview/viewmodel/styles/ViewStyle.java b/src/jalview/viewmodel/styles/ViewStyle.java
index 3ed5634..91f2f0c 100644
--- a/src/jalview/viewmodel/styles/ViewStyle.java
+++ b/src/jalview/viewmodel/styles/ViewStyle.java
@@ -1,9 +1,29 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.viewmodel.styles;
 
-import java.awt.Color;
-
 import jalview.api.ViewStyleI;
 
+import java.awt.Color;
+
 /**
  * A container for holding alignment view properties. View properties are
  * data-independent, which means they can be safely copied between views
@@ -148,6 +168,12 @@ public class ViewStyle implements ViewStyleI
    */
   private boolean scaleProteinAsCdna = true;
 
+  /*
+   * if true, font changes to protein or cDNA are applied to both
+   * sides of a split screen
+   */
+  private boolean proteinFontAsCdna = true;
+
   /**
    * Copy constructor
    * 
@@ -175,6 +201,7 @@ public class ViewStyle implements ViewStyleI
     setScaleAboveWrapped(vs.getScaleAboveWrapped());
     setScaleLeftWrapped(vs.getScaleLeftWrapped());
     setScaleProteinAsCdna(vs.isScaleProteinAsCdna());
+    setProteinFontAsCdna(vs.isProteinFontAsCdna());
     setScaleRightWrapped(vs.getScaleRightWrapped());
     setSeqNameItalics(vs.isSeqNameItalics());
     setShowAnnotation(vs.isShowAnnotation());
@@ -186,6 +213,8 @@ public class ViewStyle implements ViewStyleI
     setShowNPFeats(vs.isShowNPFeats());
     setShowSequenceFeaturesHeight(vs.isShowSequenceFeaturesHeight());
     setShowSequenceFeatures(vs.isShowSequenceFeatures());
+    setShowComplementFeatures(vs.isShowComplementFeatures());
+    setShowComplementFeaturesOnTop(vs.isShowComplementFeaturesOnTop());
     setShowText(vs.getShowText());
     setShowUnconserved(vs.getShowUnconserved());
     setTextColour(vs.getTextColour());
@@ -235,6 +264,7 @@ public class ViewStyle implements ViewStyleI
             && getScaleAboveWrapped() == vs.getScaleAboveWrapped()
             && getScaleLeftWrapped() == vs.getScaleLeftWrapped()
             && isScaleProteinAsCdna() == vs.isScaleProteinAsCdna()
+            && isProteinFontAsCdna() == vs.isProteinFontAsCdna()
             && getScaleRightWrapped() == vs.getScaleRightWrapped()
             && isSeqNameItalics() == vs.isSeqNameItalics()
             && isShowAnnotation() == vs.isShowAnnotation()
@@ -247,25 +277,26 @@ public class ViewStyle implements ViewStyleI
             && isShowSequenceFeaturesHeight() == vs
                     .isShowSequenceFeaturesHeight()
             && isShowSequenceFeatures() == vs.isShowSequenceFeatures()
+            && isShowComplementFeatures() == vs.isShowComplementFeatures()
+            && isShowComplementFeaturesOnTop() == vs
+                    .isShowComplementFeaturesOnTop()
             && getShowText() == vs.getShowText()
             && getShowUnconserved() == vs.getShowUnconserved()
             && getThreshold() == vs.getThreshold()
             && getThresholdTextColour() == vs.getThresholdTextColour()
             && isUpperCasebold() == vs.isUpperCasebold()
-            && getWrapAlignment() == vs.getWrapAlignment() && getWrappedWidth() == vs
-            .getWrappedWidth());
+            && getWrapAlignment() == vs.getWrapAlignment()
+            && getWrappedWidth() == vs.getWrappedWidth());
     /*
-     * and compare non-primitive types; syntax below will match null with null values
+     * and compare non-primitive types; syntax below will match null with null
+     * values
      */
-    match = match
-            && String.valueOf(getFontName()).equals(
-                    String.valueOf(vs.getFontName()));
-    match = match
-            && String.valueOf(getTextColour()).equals(
-                    String.valueOf(vs.getTextColour()));
-    match = match
-            && String.valueOf(getTextColour2()).equals(
-                    String.valueOf(vs.getTextColour2()));
+    match = match && String.valueOf(getFontName())
+            .equals(String.valueOf(vs.getFontName()));
+    match = match && String.valueOf(getTextColour())
+            .equals(String.valueOf(vs.getTextColour()));
+    match = match && String.valueOf(getTextColour2())
+            .equals(String.valueOf(vs.getTextColour2()));
     return match;
     // return equivalent(this, (ViewStyle) other);
   }
@@ -339,6 +370,10 @@ public class ViewStyle implements ViewStyleI
 
   private int fontStyle;
 
+  private boolean showComplementFeatures;
+
+  private boolean showComplementFeaturesOnTop;
+
   /**
    * GUI state
    * 
@@ -642,7 +677,6 @@ public class ViewStyle implements ViewStyleI
     abovePIDThreshold = b;
   }
 
-  
   /**
    * DOCUMENT ME!
    * 
@@ -667,7 +701,6 @@ public class ViewStyle implements ViewStyleI
     this.charWidth = w;
   }
 
-
   /**
    * @param value
    *          indicating if subsequent colourscheme changes will be propagated
@@ -1075,4 +1108,40 @@ public class ViewStyle implements ViewStyleI
   {
     this.scaleProteinAsCdna = b;
   }
+
+  @Override
+  public boolean isProteinFontAsCdna()
+  {
+    return proteinFontAsCdna;
+  }
+
+  @Override
+  public void setProteinFontAsCdna(boolean b)
+  {
+    proteinFontAsCdna = b;
+  }
+
+  @Override
+  public void setShowComplementFeatures(boolean b)
+  {
+    showComplementFeatures = b;
+  }
+
+  @Override
+  public boolean isShowComplementFeatures()
+  {
+    return showComplementFeatures;
+  }
+
+  @Override
+  public void setShowComplementFeaturesOnTop(boolean b)
+  {
+    showComplementFeaturesOnTop = b;
+  }
+
+  @Override
+  public boolean isShowComplementFeaturesOnTop()
+  {
+    return showComplementFeaturesOnTop;
+  }
 }