X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FAlignCalcManager.java;h=8a1c4f5405091db4accd6c12ef3516ce98c84d21;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=9d2c6615883f9e2a3ae494bc01c2b4d772953313;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git

diff --git a/src/jalview/workers/AlignCalcManager.java b/src/jalview/workers/AlignCalcManager.java
index 9d2c661..8a1c4f5 100644
--- a/src/jalview/workers/AlignCalcManager.java
+++ b/src/jalview/workers/AlignCalcManager.java
@@ -1,23 +1,29 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
  *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.workers;
 
+import jalview.api.AlignCalcManagerI;
+import jalview.api.AlignCalcWorkerI;
+import jalview.datamodel.AlignmentAnnotation;
+
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.HashSet;
@@ -26,10 +32,6 @@ import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
-import jalview.api.AlignCalcManagerI;
-import jalview.api.AlignCalcWorkerI;
-import jalview.datamodel.AlignmentAnnotation;
-
 public class AlignCalcManager implements AlignCalcManagerI
 {
   private volatile List<AlignCalcWorkerI> restartable = Collections
@@ -254,10 +256,12 @@ public class AlignCalcManager implements AlignCalcManagerI
       for (List<AlignCalcWorkerI> workers : updating.values())
       {
         for (AlignCalcWorkerI worker : workers)
+        {
           if (worker.involves(alignmentAnnotation))
           {
             return true;
           }
+        }
       }
     }
     return false;
@@ -289,7 +293,7 @@ public class AlignCalcManager implements AlignCalcManagerI
     AlignCalcWorkerI[] workers;
     synchronized (canUpdate)
     {
-      workers = canUpdate.toArray(new AlignCalcWorkerI[0]);
+      workers = canUpdate.toArray(new AlignCalcWorkerI[canUpdate.size()]);
     }
     for (AlignCalcWorkerI worker : workers)
     {