X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FAlignmentAnnotationFactory.java;h=2b7d9e1f57d46c58d6aeb99aeeee56a99c72dc89;hb=60083c09e41c5685e7afea332b58dbca2cdd61a7;hp=f804a19c16ba0c53466db6234bb72c56d2262e87;hpb=50973d198edf5874fc8c41275e30a698dd51c2e9;p=jalview.git

diff --git a/src/jalview/workers/AlignmentAnnotationFactory.java b/src/jalview/workers/AlignmentAnnotationFactory.java
index f804a19..2b7d9e1 100644
--- a/src/jalview/workers/AlignmentAnnotationFactory.java
+++ b/src/jalview/workers/AlignmentAnnotationFactory.java
@@ -32,11 +32,11 @@ public class AlignmentAnnotationFactory
   {
     // TODO need an interface for AlignFrame by which to access
     // its AlignViewportI and AlignmentViewPanel
-    AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame() ;
+    AlignmentViewPanel currentAlignFrame = Jalview.getCurrentAlignFrame().alignPanel;
     if (currentAlignFrame != null)
     {
-      newCalculator(currentAlignFrame.getViewport(), currentAlignFrame
-              .getAlignPanels().get(0), counter);
+      newCalculator(currentAlignFrame.getAlignViewport(),
+              currentAlignFrame, counter);
     }
     else
     {