X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FAlignmentAnnotationFactory.java;h=9c9ea830301ff0b83b53a6953142ed9556faec41;hb=dde303bc73617ab4eb3e681e67cf899e6a971318;hp=f804a19c16ba0c53466db6234bb72c56d2262e87;hpb=408b2821c8daf99245bf6358d06760701d90ddd8;p=jalview.git

diff --git a/src/jalview/workers/AlignmentAnnotationFactory.java b/src/jalview/workers/AlignmentAnnotationFactory.java
index f804a19..9c9ea83 100644
--- a/src/jalview/workers/AlignmentAnnotationFactory.java
+++ b/src/jalview/workers/AlignmentAnnotationFactory.java
@@ -32,11 +32,11 @@ public class AlignmentAnnotationFactory
   {
     // TODO need an interface for AlignFrame by which to access
     // its AlignViewportI and AlignmentViewPanel
-    AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame() ;
+    AlignmentViewPanel currentAlignFrame = Jalview.getCurrentAlignFrame().alignPanel;
     if (currentAlignFrame != null)
     {
-      newCalculator(currentAlignFrame.getViewport(), currentAlignFrame
-              .getAlignPanels().get(0), counter);
+      newCalculator(currentAlignFrame.getAlignViewport(),
+              currentAlignFrame, counter);
     }
     else
     {
@@ -69,7 +69,7 @@ public class AlignmentAnnotationFactory
   {
     // TODO need an interface for AlignFrame by which to access
     // its AlignViewportI and AlignmentViewPanel
-    AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame() ;
+    AlignFrame currentAlignFrame = Jalview.getCurrentAlignFrame();
     if (currentAlignFrame != null)
     {
       newCalculator(currentAlignFrame.getViewport(), currentAlignFrame
@@ -91,8 +91,7 @@ public class AlignmentAnnotationFactory
    *          provider of AlignmentAnnotation for the alignment
    */
   public static void newCalculator(AlignViewportI viewport,
-          AlignmentViewPanel panel,
-          AnnotationProviderI calculator)
+          AlignmentViewPanel panel, AnnotationProviderI calculator)
   {
     new AnnotationWorker(viewport, panel, calculator);
   }