X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FAnnotationWorker.java;h=b812c655048bd65fad36f940c31a517a840051dd;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=8f37f15e7377bba0153d42203846bee11bab188c;hpb=a57976ba40e1abe6d7c1940386e1a25419ef9c9d;p=jalview.git

diff --git a/src/jalview/workers/AnnotationWorker.java b/src/jalview/workers/AnnotationWorker.java
index 8f37f15..b812c65 100644
--- a/src/jalview/workers/AnnotationWorker.java
+++ b/src/jalview/workers/AnnotationWorker.java
@@ -90,7 +90,12 @@ class AnnotationWorker extends AlignCalcWorker
           for (AlignmentAnnotation ann : anns)
           {
             AlignmentAnnotation theAnn = alignment.findOrCreateAnnotation(
-                    ann.label, ann.description, false, null, null);
+                    ann.label, ann.getCalcId(), ann.autoCalculated,
+                    ann.sequenceRef,
+                    ann.groupRef);
+            if (ann.description!=null) {
+              theAnn.description = ann.description;
+            }
             theAnn.showAllColLabels = true;
             theAnn.graph = AlignmentAnnotation.BAR_GRAPH;
             theAnn.scaleColLabel = true;