X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FColumnCounterWorker.java;h=dd56aaf78c070fd68801536b57aa9d4453bad4dc;hb=c0b7a760fe1ced5fe25ee3c3fd272e03f7526fa2;hp=4e1a336c17e77564305fde43a7ec1764f5ba85b4;hpb=f5be72936a417898b982510adf7e23d2f313c59a;p=jalview.git

diff --git a/src/jalview/workers/ColumnCounterWorker.java b/src/jalview/workers/ColumnCounterWorker.java
index 4e1a336..dd56aaf 100644
--- a/src/jalview/workers/ColumnCounterWorker.java
+++ b/src/jalview/workers/ColumnCounterWorker.java
@@ -168,8 +168,7 @@ class ColumnCounterWorker extends AlignCalcWorker
      */
     AlignmentAnnotation ann = alignViewport.getAlignment()
             .findOrCreateAnnotation(counter.getName(),
-                    counter.getDescription(), false, null,
-                    null);
+                    counter.getDescription(), false, null, null);
     ann.description = counter.getDescription();
     ann.showAllColLabels = true;
     ann.scaleColLabel = true;
@@ -184,35 +183,6 @@ class ColumnCounterWorker extends AlignCalcWorker
   }
 
   /**
-   * Calculate min and max values of annotations and set as graphMin, graphMax
-   * on the AlignmentAnnotation. This is needed because otherwise, well, bad
-   * things happen.
-   * 
-   * @param ann
-   * @param anns
-   */
-  private void setGraphMinMax(AlignmentAnnotation ann, Annotation[] anns)
-  {
-    // TODO feels like this belongs inside AlignmentAnnotation!
-    float max = Float.MIN_VALUE;
-    float min = Float.MAX_VALUE;
-    boolean set = false;
-    for (Annotation a : anns) {
-      if (a != null) {
-        set = true;
-        float val = a.value;
-        max = Math.max(max, val);
-        min = Math.min(min, val);
-      }
-    }
-    if (set)
-    {
-      ann.graphMin = min;
-      ann.graphMax = max;
-    }
-  }
-
-  /**
    * Returns a count of any feature types present at the specified position of
    * the alignment
    *