X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConsensusThread.java;h=0a37c293ff932a7abdb652c19b1d44f63aad6173;hb=e309b8d9bd62fb304fdd612c7385e76027d2f2d7;hp=8cde493b8fa91d50218929ca394b8d345142f2f9;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java
index 8cde493..0a37c29 100644
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -158,7 +158,7 @@ public class ConsensusThread extends AlignCalcWorker implements
             && hconsensus != null)
     {
       AAFrequency.completeConsensus(consensus, hconsensus, 0,
-              hconsensus.length, alignViewport.getIgnoreGapsConsensus(),
+              hconsensus.length, alignViewport.isIgnoreGapsConsensus(),
               alignViewport.isShowSequenceLogo(), nseq);
     }
   }