X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConservationThread.java;h=11ec5212593d67803a905de96e98e479f5c34c23;hb=e838644df5d5a10a16cf0ad7fb23d24dd7d2729a;hp=5c303fd4449dd8aa1b2c3f08df1fc4c79f94d974;hpb=25551bf7f81cd62e7b427f5787f2879eab2afed7;p=jalview.git diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java index 5c303fd..11ec521 100644 --- a/src/jalview/workers/ConservationThread.java +++ b/src/jalview/workers/ConservationThread.java @@ -94,8 +94,7 @@ public class ConservationThread extends AlignCalcWorker } try { - cons = Conservation.calculateConservation("All", - jalview.schemes.ResidueProperties.propHash, 3, + cons = Conservation.calculateConservation("All", 3, alignment.getSequences(), 0, alWidth - 1, false, ConsPercGaps, quality != null); } catch (IndexOutOfBoundsException x)