X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConservationThread.java;h=e71c4f58a60d1ca927d0829db7a7a5f9e6f286c5;hb=5abd8cc59e692171861a337e189faaa26dcfff16;hp=24cfb084aae9c5bf76cc6562362cb9fe84d38084;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java index 24cfb08..e71c4f5 100644 --- a/src/jalview/workers/ConservationThread.java +++ b/src/jalview/workers/ConservationThread.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -94,7 +94,7 @@ public class ConservationThread extends AlignCalcWorker } try { - cons = Conservation.calculateConservation("All", 3, + cons = Conservation.calculateConservation("All", alignment.getSequences(), 0, alWidth - 1, false, ConsPercGaps, quality != null); } catch (IndexOutOfBoundsException x)