X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConservationThread.java;h=e71c4f58a60d1ca927d0829db7a7a5f9e6f286c5;hb=d0d8e3e2f528581af454e5b2a51372a9f4677114;hp=11ec5212593d67803a905de96e98e479f5c34c23;hpb=2bd3c28fe234c6883bec5412db83a809ab8d1500;p=jalview.git diff --git a/src/jalview/workers/ConservationThread.java b/src/jalview/workers/ConservationThread.java index 11ec521..e71c4f5 100644 --- a/src/jalview/workers/ConservationThread.java +++ b/src/jalview/workers/ConservationThread.java @@ -94,7 +94,7 @@ public class ConservationThread extends AlignCalcWorker } try { - cons = Conservation.calculateConservation("All", 3, + cons = Conservation.calculateConservation("All", alignment.getSequences(), 0, alWidth - 1, false, ConsPercGaps, quality != null); } catch (IndexOutOfBoundsException x)