X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FAWSThread.java;h=b158448ab65ab93f138bc3ff5fd42279eff5fa0b;hb=468f7ee90b711b097c9a491cbe4b5e3c68481019;hp=e55761428171003eb8a3746527bd834602b44975;hpb=be32c14cd8e48fe0a207cd7030cb9cd46f894678;p=jalview.git

diff --git a/src/jalview/ws/AWSThread.java b/src/jalview/ws/AWSThread.java
index e557614..b158448 100644
--- a/src/jalview/ws/AWSThread.java
+++ b/src/jalview/ws/AWSThread.java
@@ -32,6 +32,7 @@ import jalview.util.MessageManager;
 import jalview.viewmodel.seqfeatures.FeatureRendererSettings;
 
 import java.util.LinkedHashSet;
+import java.util.List;
 import java.util.Set;
 
 public abstract class AWSThread extends Thread
@@ -98,6 +99,7 @@ public abstract class AWSThread extends Thread
   /**
    * generic web service job/subjob poll loop
    */
+  @Override
   public void run()
   {
     JobStateSummary jstate = null;
@@ -133,8 +135,8 @@ public abstract class AWSThread extends Thread
           {
             // Deal with Transaction exceptions
             wsInfo.appendProgressText(jobs[j].jobnum, MessageManager
-                    .formatMessage("info.server_exception", new Object[]
-                    { WebServiceName, ex.getMessage() }));
+                    .formatMessage("info.server_exception", new Object[] {
+                        WebServiceName, ex.getMessage() }));
             // always output the exception's stack trace to the log
             Cache.log.warn(WebServiceName + " job(" + jobs[j].jobnum
                     + ") Server exception.");
@@ -199,7 +201,8 @@ public abstract class AWSThread extends Thread
       Cache.log
               .debug("WebServiceJob poll loop finished with no jobs created.");
       wsInfo.setStatus(WebserviceInfo.STATE_STOPPED_ERROR);
-      wsInfo.appendProgressText(MessageManager.getString("info.no_jobs_ran"));
+      wsInfo.appendProgressText(MessageManager
+              .getString("info.no_jobs_ran"));
       wsInfo.setFinishedNoResults();
     }
   }
@@ -377,7 +380,7 @@ public abstract class AWSThread extends Thread
     WsUrl = wsurl2;
     if (alframe != null)
     {
-      Set<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
+      List<AlignedCodonFrame> cf = alframe.getViewport().getAlignment()
               .getCodonFrames();
       if (cf != null)
       {