X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDBRefFetcher.java;h=9742bca1d0f8c5419d673e9608359b8815ea3bd1;hb=fe55e5ed429347087cccb692e014f23c01026327;hp=a55658bdf461eb6fc3e08cec1919046e67ecc971;hpb=ad20cd92225f2ee8c251d39b00b90555d382a616;p=jalview.git

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index a55658b..9742bca 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
- * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -14,6 +14,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.ws;
 
@@ -30,6 +31,7 @@ import jalview.gui.CutAndPasteTransfer;
 import jalview.gui.Desktop;
 import jalview.gui.IProgressIndicator;
 import jalview.gui.OOMWarning;
+import jalview.util.MessageManager;
 import jalview.ws.dbsources.das.api.jalviewSourceI;
 import jalview.ws.seqfetcher.DbSourceProxy;
 
@@ -136,10 +138,13 @@ public class DBRefFetcher implements Runnable
       {
         jalviewSourceI src = en.nextElement();
         List<DbSourceProxy> sp = src.getSequenceSourceProxies();
-        selsources.addAll(sp);
-        if (sp.size() > 1)
+        if (sp != null)
         {
-          Cache.log.debug("Added many Db Sources for :" + src.getTitle());
+          selsources.addAll(sp);
+          if (sp.size() > 1)
+          {
+            Cache.log.debug("Added many Db Sources for :" + src.getTitle());
+          }
         }
       }
       // select appropriate databases based on alignFrame context.
@@ -446,17 +451,15 @@ public class DBRefFetcher implements Runnable
     } // all databases have been queries.
     if (sbuffer.length() > 0)
     {
-      output.setText("Your sequences have been verified against known sequence databases. Some of the ids have been\n"
-              + "altered, most likely the start/end residue will have been updated.\n"
-              + "Save your alignment to maintain the updated id.\n\n"
+      output.setText(MessageManager.getString("label.your_sequences_have_been_verified")
               + sbuffer.toString());
-      Desktop.addInternalFrame(output, "Sequence names updated ", 600, 300);
+      Desktop.addInternalFrame(output, MessageManager.getString("label.sequence_names_updated"), 600, 300);
       // The above is the dataset, we must now find out the index
       // of the viewed sequence
 
     }
 
-    af.setProgressBar("DBRef search completed", startTime);
+    af.setProgressBar(MessageManager.getString("label.dbref_search_completed"), startTime);
     // promptBeforeBlast();
 
     running = false;