X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDBRefFetcher.java;h=b708ec1a0479ca6bc626f48ba6a00eaa2a6b9baf;hb=a21b84a669a9620f6943b9b5054e8756cb6f0687;hp=d531fea96622ee408002129bd8d4cc163749069d;hpb=1503bcb2b548b7f6bc11bcbf081455ab94839099;p=jalview.git

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index d531fea..b708ec1 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -400,7 +400,7 @@ public class DBRefFetcher implements Runnable
             {
               SequenceI sequence = dataset[seqIndex];
               DBRefEntry[] uprefs = jalview.util.DBRefUtils.selectRefs(
-                      sequence.getDBRef(),
+                      sequence.getDBRefs(),
                       new String[] { dbsource.getDbSource() }); // jalview.datamodel.DBRefSource.UNIPROT
               // });
               // check for existing dbrefs to use
@@ -524,7 +524,7 @@ public class DBRefFetcher implements Runnable
       Vector sequenceMatches = new Vector();
       // look for corresponding accession ids
       DBRefEntry[] entryRefs = jalview.util.DBRefUtils.selectRefs(
-              entry.getDBRef(), new String[] { dbSource });
+              entry.getDBRefs(), new String[] { dbSource });
       if (entryRefs == null)
       {
         System.err
@@ -591,8 +591,8 @@ public class DBRefFetcher implements Runnable
         // no existing references
         // TODO: test for legacy where uniprot or EMBL refs exist but no
         // mappings are made (but content matches retrieved set)
-        boolean updateRefFrame = sequence.getDBRef() == null
-                || sequence.getDBRef().length == 0;
+        boolean updateRefFrame = sequence.getDBRefs() == null
+                || sequence.getDBRefs().length == 0;
         // TODO:
         // verify sequence against the entry sequence
 
@@ -737,7 +737,7 @@ public class DBRefFetcher implements Runnable
     for (int i = 0; sequencesArray != null && i < sequencesArray.length; i++)
     {
       nseq.addElement(sequencesArray[i]);
-      DBRefEntry dbr[] = sequencesArray[i].getDBRef();
+      DBRefEntry dbr[] = sequencesArray[i].getDBRefs();
       jalview.datamodel.Mapping map = null;
       for (int r = 0; (dbr != null) && r < dbr.length; r++)
       {