X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDasSequenceFeatureFetcher.java;h=d7ba24ddbc12e33e90a3bf82eaa988fc3b0a22ad;hb=4b3e12d9f3c2e2ad8a0317160881cef075690e97;hp=808d9a076c125ad7597cd4ec09e646d42f73986a;hpb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;p=jalview.git

diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java
index 808d9a0..d7ba24d 100644
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -181,7 +181,7 @@ public class DasSequenceFeatureFetcher
     int refCount = 0;
     for (int i = 0; i < sequences.length; i++)
     {
-      DBRefEntry[] dbref = sequences[i].getDBRef();
+      DBRefEntry[] dbref = sequences[i].getDBRefs();
       if (dbref != null)
       {
         for (int j = 0; j < dbref.length; j++)
@@ -238,6 +238,7 @@ public class DasSequenceFeatureFetcher
 
   class FetchSeqFeatures implements Runnable
   {
+    @Override
     public void run()
     {
       startFetching();
@@ -247,10 +248,15 @@ public class DasSequenceFeatureFetcher
 
   class FetchDBRefs implements Runnable
   {
+    @Override
     public void run()
     {
       running = true;
-      new DBRefFetcher(sequences, af).fetchDBRefs(true);
+      boolean isNuclueotide = af.getViewport().getAlignment()
+              .isNucleotide();
+      new jalview.ws.DBRefFetcher(sequences, af, null, af.featureSettings,
+              isNuclueotide).fetchDBRefs(true);
+
       startFetching();
       setGuiFetchComplete();
     }
@@ -638,7 +644,7 @@ public class DasSequenceFeatureFetcher
       return null;
     }
     DBRefEntry[] uprefs = jalview.util.DBRefUtils.selectRefs(
-            seq.getDBRef(), new String[] {
+            seq.getDBRefs(), new String[] {
             // jalview.datamodel.DBRefSource.PDB,
             jalview.datamodel.DBRefSource.UNIPROT,
             // jalview.datamodel.DBRefSource.EMBL - not tested on any EMBL coord