X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDbSourceProxyImpl.java;fp=src%2Fjalview%2Fws%2FDbSourceProxyImpl.java;h=0000000000000000000000000000000000000000;hb=6b406c397d41a0f2d84b75f13e7ab478932bf57d;hp=17040d4360a66fef68edf8ec44e9667dfe574270;hpb=ce886100c1eae01eac7d59c961e694f4493d4bcb;p=jalview.git

diff --git a/src/jalview/ws/DbSourceProxyImpl.java b/src/jalview/ws/DbSourceProxyImpl.java
deleted file mode 100644
index 17040d4..0000000
--- a/src/jalview/ws/DbSourceProxyImpl.java
+++ /dev/null
@@ -1,96 +0,0 @@
-package jalview.ws;
-
-import jalview.datamodel.Alignment;
-import jalview.datamodel.DBRefSource;
-import jalview.io.FormatAdapter;
-import jalview.io.IdentifyFile;
-
-import java.util.Hashtable;
-
-/**
- * common methods for implementations of the DbSourceProxy interface.
- * 
- * @author JimP
- *
- */
-public abstract class DbSourceProxyImpl implements DbSourceProxy
-{
-  public DbSourceProxyImpl()
-  {
-    // default constructor - do nothing probably.
-  }
-  private Hashtable props=null;
-  /* (non-Javadoc)
-   * @see jalview.ws.DbSourceProxy#getDbSourceProperties()
-   */
-  public Hashtable getDbSourceProperties()
-  {
-    return props;
-  }
-  protected void addDbSourceProperty(Object propname)
-  {
-    addDbSourceProperty(propname, propname);
-  }
-
-  protected void addDbSourceProperty(Object propname, Object propvalue)
-  {
-    if (props==null)
-    {
-      props = new Hashtable();
-    }
-    props.put(propname, propvalue);
-  }
-  boolean queryInProgress=false;
-  protected StringBuffer results = null;
-  /*
-   * (non-Javadoc)
-   * 
-   * @see jalview.ws.DbSourceProxy#getRawRecords()
-   */
-  public StringBuffer getRawRecords()
-  {
-    return results;
-  }
-
-  /* (non-Javadoc)
-   * @see jalview.ws.DbSourceProxy#queryInProgress()
-   */
-  public boolean queryInProgress()
-  {
-    return queryInProgress;
-  }
-  /**
-   * call to set the queryInProgress flag
-   *
-   */
-  protected void startQuery()
-  {
-    queryInProgress=true;
-  }
-  /**
-   * call to clear the queryInProgress flag
-   *
-   */
-  protected void stopQuery()
-  {
-    queryInProgress=false;
-  }
-
-  /**
-   * create an alignment from raw text file...
-   * @param result
-   * @return null or a valid alignment
-   * @throws Exception
-   */
-  protected Alignment parseResult(String result) throws Exception {
-    Alignment sequences = null;
-    String format = new IdentifyFile().Identify(result, "Paste");
-    if (FormatAdapter.isValidFormat(format))
-    {
-      sequences = new FormatAdapter().readFile(result.toString(), "Paste",
-            format);
-    }
-    return sequences;
-  }
-  
-}