X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FMsaWSClient.java;h=7d65cebb08cfd5f3b3476a2ea288fb3b0968fc95;hb=6fc9aca27f606f6e3a0121597896e1a5dae35c36;hp=479f22f1e1454d0a41b724e72a30189e0e17afd6;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/ws/MsaWSClient.java b/src/jalview/ws/MsaWSClient.java
index 479f22f..7d65ceb 100755
--- a/src/jalview/ws/MsaWSClient.java
+++ b/src/jalview/ws/MsaWSClient.java
@@ -43,6 +43,7 @@ public class MsaWSClient
    * server is a WSDL2Java generated stub for an archetypal MsaWSI service.
    */
   ext.vamsas.MuscleWS server;
+  AlignFrame alignFrame;
 
 
   /**
@@ -56,10 +57,14 @@ public class MsaWSClient
    * @param preserveOrder DOCUMENT ME!
    */
 
-  public MsaWSClient(ext.vamsas.ServiceHandle sh, String altitle, SequenceI[] msa,
-                     boolean submitGaps, boolean preserveOrder, Alignment seqdataset)
+  public MsaWSClient(ext.vamsas.ServiceHandle sh, String altitle,
+                     SequenceI[] msa,
+                     boolean submitGaps, boolean preserveOrder,
+                     Alignment seqdataset,
+                     AlignFrame _alignFrame)
   {
 
+    alignFrame = _alignFrame;
     if (!sh.getAbstractName().equals("MsaWS"))
     {
       JOptionPane.showMessageDialog(Desktop.desktop,
@@ -474,6 +479,10 @@ public class MsaWSClient
           }
           // TODO: JBPNote Should also rename the query sequence sometime...
           AlignFrame af = new AlignFrame(al);
+
+          //>>>This is a fix for the moment, until a better solution is found!!<<<
+          af.getFeatureRenderer().transferSettings(alignFrame.getFeatureRenderer());
+
           af.addSortByOrderMenuItem(ServiceName + " Ordering",
                                     msaorder);