X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FMsaWServices.java;h=ac89f6835833464555d049c809c3d0cdf6d96df3;hb=c954e7c8d0953fee214bf897608410a1bc41ec13;hp=69b5e23e7ff1a67623ea3862d25afd1558127667;hpb=65b94714ece0726653890609ed1136708cf77997;p=jalview.git diff --git a/src/jalview/ws/MsaWServices.java b/src/jalview/ws/MsaWServices.java index 69b5e23..ac89f68 100755 --- a/src/jalview/ws/MsaWServices.java +++ b/src/jalview/ws/MsaWServices.java @@ -1,5 +1,26 @@ -package jalview.ws; -import java.util.Hashtable; +/* +* Jalview - A Sequence Alignment Editor and Viewer +* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle +* +* This program is free software; you can redistribute it and/or +* modify it under the terms of the GNU General Public License +* as published by the Free Software Foundation; either version 2 +* of the License, or (at your option) any later version. +* +* This program is distributed in the hope that it will be useful, +* but WITHOUT ANY WARRANTY; without even the implied warranty of +* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +* GNU General Public License for more details. +* +* You should have received a copy of the GNU General Public License +* along with this program; if not, write to the Free Software +* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA +*/ +package jalview.ws; + +import java.util.Hashtable; + + /** *

Title: MsaWServices

* @@ -11,32 +32,31 @@ import java.util.Hashtable; * * @author not attributable * @version 1.0 - */ + */ /** * TODO: MsaWServices will be set from properties and be dynamically discovered. - */ -public class MsaWServices { - public static Hashtable info; - static - { - info = new Hashtable(); - info.put("ClustalWS", - new String[] - { - "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS", - "ClustalW Alignment job", - "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" + - " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." - + " Nucleic Acids Research, submitted, June 1994." - }); - info.put("MuscleWS", - new String[] - { - "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS", - "Muscle Alignment job", - "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " - + - "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97." - }); - }; -} + */ +public class MsaWServices { + public static Hashtable info; + + static { + info = new Hashtable(); + info.put("ClustalWS", + new String[] { + "http://www.compbio.dundee.ac.uk/JalviewWS/services/ClustalWS", + "ClustalW Alignment job", + + "\"Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple" + + " sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice." + + " Nucleic Acids Research, submitted, June 1994." + }); + info.put("MuscleWS", + new String[] { + "http://www.compbio.dundee.ac.uk/JalviewWS/services/MuscleWS", + "Muscle Alignment job", + + "Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment " + + "with high accuracy and high throughput, Nucleic Acids Research 32(5), 1792-97." + }); + } +}