X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FSequenceFetcher.java;h=34e1fb45f1c246cf69addba792ebb7545dc03b6a;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=9c42f0a0e7c00e352b8c8a833f7c47b06d22067f;hpb=be32c14cd8e48fe0a207cd7030cb9cd46f894678;p=jalview.git diff --git a/src/jalview/ws/SequenceFetcher.java b/src/jalview/ws/SequenceFetcher.java index 9c42f0a..34e1fb4 100644 --- a/src/jalview/ws/SequenceFetcher.java +++ b/src/jalview/ws/SequenceFetcher.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * @@ -20,11 +20,6 @@ */ package jalview.ws; -import java.util.ArrayList; -import java.util.Enumeration; -import java.util.List; -import java.util.Vector; - import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefSource; @@ -33,6 +28,11 @@ import jalview.ws.dbsources.das.api.jalviewSourceI; import jalview.ws.seqfetcher.ASequenceFetcher; import jalview.ws.seqfetcher.DbSourceProxy; +import java.util.ArrayList; +import java.util.Enumeration; +import java.util.List; +import java.util.Vector; + /** * This is the the concrete implementation of the sequence retrieval interface * and abstract class in jalview.ws.seqfetcher. This implements the run-time @@ -167,13 +167,11 @@ public class SequenceFetcher extends ASequenceFetcher { nm = nm.substring(4); } - dassrc.add(new String[] - { srcs[i], nm.toUpperCase() }); + dassrc.add(new String[] { srcs[i], nm.toUpperCase() }); } else { - nondas.add(new String[] - { srcs[i], nm.toUpperCase() }); + nondas.add(new String[] { srcs[i], nm.toUpperCase() }); } } } @@ -331,9 +329,8 @@ public class SequenceFetcher extends ASequenceFetcher } else { - noProds.addElement((dna ? new Object[] - { al, al } : new Object[] - { al })); + noProds.addElement((dna ? new Object[] { al, al } + : new Object[] { al })); } } @@ -369,8 +366,7 @@ public class SequenceFetcher extends ASequenceFetcher } if (ds == null) { - ds = new Alignment(new SequenceI[] - { sq }); + ds = new Alignment(new SequenceI[] { sq }); } else