X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FSequenceFetcher.java;h=a0b77deff937aa8ef2ef395515a87e2a210904b4;hb=bf97c293ad31f6ed5006a97d3a7d079c032652e8;hp=d5065b5ae2bf46e5b8e3794c3206ff6f6350647e;hpb=ba74c240931531706fd2f95bde111033e513e71e;p=jalview.git diff --git a/src/jalview/ws/SequenceFetcher.java b/src/jalview/ws/SequenceFetcher.java index d5065b5..a0b77de 100644 --- a/src/jalview/ws/SequenceFetcher.java +++ b/src/jalview/ws/SequenceFetcher.java @@ -60,11 +60,11 @@ public class SequenceFetcher extends ASequenceFetcher addDBRefSourceImpl(EmblSource.class); addDBRefSourceImpl(EmblCdsSource.class); addDBRefSourceImpl(Uniprot.class); - // addDBRefSourceImpl(UniprotName.class); addDBRefSourceImpl(Pdb.class); addDBRefSourceImpl(PfamFull.class); addDBRefSourceImpl(PfamSeed.class); addDBRefSourceImpl(RfamSeed.class); + if (addDas) { registerDasSequenceSources(); @@ -78,7 +78,8 @@ public class SequenceFetcher extends ASequenceFetcher public String[] getOrderedSupportedSources() { String[] srcs = this.getSupportedDb(); - ArrayList dassrc = new ArrayList(), nondas = new ArrayList(); + ArrayList dassrc = new ArrayList(), + nondas = new ArrayList(); for (int i = 0; i < srcs.length; i++) { boolean das = false, skip = false; @@ -94,7 +95,8 @@ public class SequenceFetcher extends ASequenceFetcher else { nm = dbs.getDbName(); - if (getSourceProxy(srcs[i]) instanceof jalview.ws.dbsources.das.datamodel.DasSequenceSource) + if (getSourceProxy( + srcs[i]) instanceof jalview.ws.dbsources.das.datamodel.DasSequenceSource) { if (nm.startsWith("das:")) { @@ -118,8 +120,8 @@ public class SequenceFetcher extends ASequenceFetcher nondas.add(srcs[i]); } } - String[] tosort = nondas.toArray(new String[0]), sorted = nondas - .toArray(new String[0]); + String[] tosort = nondas.toArray(new String[0]), + sorted = nondas.toArray(new String[0]); for (int j = 0, jSize = sorted.length; j < jSize; j++) { tosort[j] = tosort[j].toLowerCase();